Season 2, Episode 6 -- Pushing Limits in Computing and Biology
Release Date: 10/26/2022
S7E2: Megan Ivory: Supporting the Quantum Workforce
Science in Parallel
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Jarrod McClean (Bonus): Parsing Logical Qubits
Science in Parallel
Quantum computing comes with a new layer of concepts. Quantum bits are called qubits, but there's more. Physical qubits are often grouped to form logical qubits. In our recent conversation with Jarrod McClean, we discussed logical qubits. And we're sharing that discussion as a Science in Parallel short.
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S7E1: Jarrod McClean: Designing Quantum Algorithms
Science in Parallel
In our seventh season, we’re putting a spotlight on quantum computing, technology that could help speed up high-performance computing and artificial intelligence, shore up cybersecurity, study complex natural systems and much more. Jarrod McClean works on quantum algorithms and applications at the Google Quantum Artificial Intelligence laboratory, and this conversation links some of the ideas about AI for science from our last season to emerging quantum technology. Join us for a conversation about Jarrod's work at Google, where he thinks quantum computing could soon enter the computational...
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S6E10: Sunita Chandrasekaran: Computation in Translation
Science in Parallel
Computational science requires translation, breaking ideas and principles into pieces that algorithms can parse. The work requires experts capable of zooming in on core computer science while also being able to step back and make sure that the big scientific questions are addressed. This guest, Sunita Chandrasekaran of the University of Delaware, moves seamlessly across these layers— from working with students and postdocs on fundamental software, collaborating with researchers on questions ranging from physics to art conservation and helping to shape AI policy in her state. In our...
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S6E9: Silvia Crivelli: Understanding Suicide Risk and Building a Foundation Model for Medicine
Science in Parallel
Nearly a decade ago, the U.S Department of Veterans Affairs and the Department of Energy launched the MVP-CHAMPION initiative, not for sports, but as a data-driven strategy for improving healthcare outcomes for veterans and others. Silvia Crivelli of Lawrence Berkeley National Laboratory turned her skills in computational biology toward this new field, especially the problem of identifying veterans at high risk for suicide. As she and her colleagues worked on this challenge, large language models and the notion of foundation models emerged. Now her team is focused on a more comprehensive...
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S6E8:Youngsoo Choi: Building Reliable Foundation Models
Science in Parallel
Foundation models-- LLMs or LLM-like tools-- are a compelling idea for advancing scientific discovery and democratizing computational science. But there's a big gap between these lofty ideas and the trustworthiness of current models. Youngsoo Choi of Lawrence Livermore National Laboratory and his colleagues are thinking about to how to close this chasm. They're engaging with questions such as: What are the essential characteristics that define a foundation model? And how do we make sure that scientists can rely on their results? In this conversation we discuss a position paper that Youngsoo...
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S6E7: Steven Wilson: Craving Chemical Efficiency
Science in Parallel
Computational scientists can take on the role of utility players in research, and Steven Wilson is one example. At Arizona State University he's built instruments, carried out experiments and dove deep into computational work. As a postdoc, he's working on a new challenge: building a quantum chemistry startup company. In this episode, he discusses his career that started with 10 years in the United States Navy Nuclear Program, how that military experience shaped his academic studies and the role of the (DOE CSGF) in shaping his research to make chemical reactions more efficient. ...
info_outline![S6E6 [REPOST]: Joe Insley Transforms Big Data into Stunning Images show art](https://assets.libsyn.com/item/37777700?height=50&width=50)
S6E6 [REPOST]: Joe Insley Transforms Big Data into Stunning Images
Science in Parallel
While we take a short summer break, we’re posting one of our favorite past episodes and a great follow-up to our last episode with Amanda Randles of Duke University. In 2023, we talked with Joe Insley of Argonne Leadership Computing Facility and Northern Illinois University about data visualization, from the practical process of helping researchers understand their results to showstopping images and animations that make the work accessible to broad audiences. Joe discusses his career path, how he and his team approach visualization projects, his work with students and his advice for...
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S6E5: Amanda Randles: A Check-Engine Light for the Heart
Science in Parallel
Duke University associate professor Amanda Randles' work to simulate and understand human blood flow and its implications demonstrates how high-performance computing paired with scientific principles can help improve human health. In this conversation, she talks about how she brought together early interests in physics, coding, biomedicine and even political science and policy and followed her enthusiasm for the Human Genome Project. She discusses how supercomputers are pushing the boundaries of what researchers can learn about the circulatory system noninvasively and how that knowledge,...
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S6E4: Joel Ye: Examining Neural Data More Efficiently and Holistically
Science in Parallel
Understanding how the brain works remains a grand scientific challenge, and it's yet another area where researchers are examining whether foundation models could help them find patterns in complex data. Joel Ye of Carnegie Mellon University talks about his work on foundation models, their potential and limitations and how others can get involved in applying these AI tools. is a Ph.D. student in the program in neural computation at Carnegie Mellon University in Pittsburgh, where he studies ways to understand brain data and brain-computer interfaces. He's a third-year
info_outlineScience in Parallel’s season two concludes with a conversation about answering important questions in biology and medicine with leadership class supercomputers, including urgent issues that came up during the COVID-19 pandemic. You’ll hear from Anda Trifan of the University of Illinois, Urbana-Champaign and Amanda Randles of Duke University.
Starting as a chemist, Anda is completing a Ph.D. in biophysics and quantitative biology at the University of Illinois Urbana-Champaign where she has studied molecular strategies that make certain cells turn cancerous. In early 2020, she joined an Argonne National Laboratory team that pivoted to working on the pandemic, and she modeled how SARS-CoV-2 infects cells, how it replicates and how it spreads through aerosols.
Amanda is an assistant professor of biomedical engineering at Duke University with roots in physics and computer science. Much of her work now focuses on large-scale simulations of how blood flows through a person’s unique network of vessels. During the pandemic, her team applied their expertise to calculations that could help physicians figure out how to split ventilators between patients who weren’t exact matches, a critical problem in early 2020 when these devices were in short supply.
Both Anda and Amanda completed Department of Energy Computational Science Graduate Fellowships. Between them, they have worked on a total of five projects that have been finalists for either the ACM Gordon Bell Prize or the Special Prize for COVID-19 research. Adding to the excitement of their pandemic work: They both navigated the at-home adventure of raising very young children during lockdown. They talk about what drives them, the challenge of working at the cutting edge of HPC and biology and medicine, and their advice for other researchers, particularly other women in science.